Abstract. Robustly estimating the state-transition probabilities of highorder Markov processes is an essential task in many applications such as natural language modeling or protei...
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
Maximum a posteriori (MAP) filtering using the HuberMarkov random field (HMRF) image model has been shown in the past to be an effective method of reducing compression artifacts i...