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» On Compressibility of Protein Sequences
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BMCBI
2005
131views more  BMCBI 2005»
13 years 7 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
EVOW
2006
Springer
13 years 11 months ago
Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines
Infection by the human papillomavirus (HPV) is associated with the development of cervical cancer. HPV can be classified to highand low-risk type according to its malignant potenti...
Sun Kim, Byoung-Tak Zhang
EDBT
2008
ACM
118views Database» more  EDBT 2008»
14 years 7 months ago
The SBC-tree: an index for run-length compressed sequences
Mohamed Y. Eltabakh, Wing-Kai Hon, Rahul Shah, Wal...
DCC
2010
IEEE
14 years 2 months ago
Lossless Compression Based on the Sequence Memoizer
In this work we describe a sequence compression method based on combining a Bayesian nonparametric sequence model with entropy encoding. The model, a hierarchy of Pitman-Yor proce...
Jan Gasthaus, Frank Wood, Yee Whye Teh
BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction
Background: We present a novel method of protein fold decoy discrimination using machine learning, more specifically using neural networks. Here, decoy discrimination is represent...
Ching-Wai Tan, David T. Jones