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130
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FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
15 years 9 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
144
Voted
BMCBI
2005
98views more  BMCBI 2005»
15 years 3 months ago
Iterative approach to model identification of biological networks
Background: Recent advances in molecular biology techniques provide an opportunity for developing detailed mathematical models of biological processes. An iterative scheme is intr...
Kapil G. Gadkar, Rudiyanto Gunawan, Francis J. Doy...
157
Voted
ANSS
2007
IEEE
15 years 10 months ago
Evaluating the Design of Biological Cells Using a Computer Workbench
For embedded systems as well as for biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can ...
Tessa E. Pronk, Simon Polstra, Andy D. Pimentel, T...
143
Voted
TCBB
2008
137views more  TCBB 2008»
15 years 3 months ago
Toward Verified Biological Models
The last several decades have witnessed a vast accumulation of biological data and data analysis. Many of these data sets represent only a small fraction of the system's behav...
Avital Sadot, Jasmin Fisher, Dan Barak, Yishai Adm...
157
Voted
VRML
2004
ACM
15 years 9 months ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...