Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...
Suffix trees and suffix arrays are widely used and largely interchangeable index structures on strings and sequences. Practitioners prefer suffix arrays due to their simplicity an...
Classification is an important problem in the field of data mining. Construction of good classifiers is computationally intensive and offers plenty of scope for parallelization. D...
This paper presents an efficient algorithm for retrieving from a database of trees, all trees that match a given query tree appro,imately, that is, within a certain error toleranc...