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PPPJ
2009
ACM
14 years 3 months ago
Phase detection using trace compilation
Dynamic compilers can optimize application code specifically for observed code behavior. Such behavior does not have to be stable across the entire program execution to be bene...
Christian Wimmer, Marcelo Silva Cintra, Michael Be...
CGO
2008
IEEE
14 years 3 months ago
Automatic array inlining in java virtual machines
Array inlining expands the concepts of object inlining to arrays. Groups of objects and arrays that reference each other are placed consecutively in memory so that their relative ...
Christian Wimmer, Hanspeter Mössenböck
BMCBI
2010
148views more  BMCBI 2010»
13 years 9 months ago
Calling SNPs without a reference sequence
Background: The most common application for the next-generation sequencing technologies is resequencing, where short reads from the genome of an individual are aligned to a refere...
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan...
BMCBI
2008
112views more  BMCBI 2008»
13 years 9 months ago
Normalization for triple-target microarray experiments
Background: Most microarray studies are made using labelling with one or two dyes which allows the hybridization of one or two samples on the same slide. In such experiments, the ...
Marie-Laure Martin-Magniette, Julie Aubert, Avner ...
WABI
2010
Springer
178views Bioinformatics» more  WABI 2010»
13 years 7 months ago
Haplotype Inference on Pedigrees with Recombinations and Mutations
Abstract. Haplotype Inference (HI) is a computational challenge of crucial importance in a range of genetic studies, such as functional genomics, pharmacogenetics and population ge...
Yuri Pirola, Paola Bonizzoni, Tao Jiang