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» On Finding Large Conjunctive Clusters
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BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa
ICWSM
2009
13 years 5 months ago
Gephi: An Open Source Software for Exploring and Manipulating Networks
Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and ...
Mathieu Bastian, Sebastien Heymann, Mathieu Jacomy
WABI
2009
Springer
102views Bioinformatics» more  WABI 2009»
14 years 2 months ago
A Tree Based Method for the Rapid Screening of Chemical Fingerprints
Background: The fingerprint of a molecule is a bitstring based on its structure, constructed such that structurally similar molecules will have similar fingerprints. Molecular fin...
Thomas G. Kristensen, Jesper Nielsen, Christian N....
COR
2010
146views more  COR 2010»
13 years 7 months ago
A search space "cartography" for guiding graph coloring heuristics
We present a search space analysis and its application in improving local search algorithms for the graph coloring problem. Using a classical distance measure between colorings, w...
Daniel Cosmin Porumbel, Jin-Kao Hao, Pascale Kuntz
SAC
2008
ACM
13 years 7 months ago
A clustering-based approach for discovering interesting places in trajectories
Because of the large amount of trajectory data produced by mobile devices, there is an increasing need for mechanisms to extract knowledge from this data. Most existing works have...
Andrey Tietbohl Palma, Vania Bogorny, Bart Kuijper...