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» On Modularity Clustering
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AAIM
2009
Springer
101views Algorithms» more  AAIM 2009»
14 years 4 months ago
Orca Reduction and ContrAction Graph Clustering
During the last years, a wide range of huge networks has been made available to researchers. The discovery of natural groups, a task called graph clustering, in such datasets is a ...
Daniel Delling, Robert Görke, Christian Schul...
ICSM
2007
IEEE
14 years 3 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
PDCAT
2004
Springer
14 years 3 months ago
Parallel Computing Platform for the Agent-Based Modeling of Multicellular Biological Systems
Abstract. Agent-based simulation of large multicellular biological systems has become a viable option owing to affordable parallel computers, such as Beowulf-style clusters. We de...
Toh Da-Jun, Francis Tang, Travis Lee, Deepak Sarda...
LISA
2007
13 years 12 months ago
Usher: An Extensible Framework for Managing Clusters of Virtual Machines
Usher is a virtual machine management system designed to impose few constraints upon the computing environment under its management. Usher enables administrators to choose how the...
Marvin McNett, Diwaker Gupta, Amin Vahdat, Geoffre...
CANDC
2006
ACM
13 years 9 months ago
Identification of functional modules in a PPI network by clique percolation clustering
Large-scale experiments and data integration have provided the opportunity to systematically analyze and comprehensively understand the topology of biological networks and biochem...
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang