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» On Open Problems in Biological Network Visualization
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SIGCOMM
2010
ACM
13 years 7 months ago
Source flow: handling millions of flows on flow-based nodes
Flow-based networks such as OpenFlow-based networks have difficulty handling a large number of flows in a node due to the capacity limitation of search engine devices such as tern...
Yasunobu Chiba, Yusuke Shinohara, Hideyuki Shimoni...
GECCO
2007
Springer
182views Optimization» more  GECCO 2007»
14 years 1 months ago
Generating large-scale neural networks through discovering geometric regularities
Connectivity patterns in biological brains exhibit many repeating motifs. This repetition mirrors inherent geometric regularities in the physical world. For example, stimuli that ...
Jason Gauci, Kenneth O. Stanley
BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
BMCBI
2010
109views more  BMCBI 2010»
13 years 7 months ago
Functional characterization and topological modularity of molecular interaction networks
Background: Analyzing interaction networks for functional characterization poses significant challenges arising from the noisy, incomplete, and generic nature of both the interact...
Jayesh Pandey, Mehmet Koyutürk, Ananth Grama
ICDM
2010
IEEE
208views Data Mining» more  ICDM 2010»
13 years 5 months ago
Bonsai: Growing Interesting Small Trees
Graphs are increasingly used to model a variety of loosely structured data such as biological or social networks and entityrelationships. Given this profusion of large-scale graph ...
Stephan Seufert, Srikanta J. Bedathur, Juliá...