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BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
BMCBI
2008
211views more  BMCBI 2008»
13 years 8 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
CORR
2010
Springer
128views Education» more  CORR 2010»
13 years 8 months ago
A Performance Study of GA and LSH in Multiprocessor Job Scheduling
Multiprocessor task scheduling is an important and computationally difficult problem. This paper proposes a comparison study of genetic algorithm and list scheduling algorithm. Bo...
S. R. Vijayalakshmi, G. Padmavathi
CORR
2010
Springer
162views Education» more  CORR 2010»
13 years 8 months ago
Random sampling of lattice paths with constraints, via transportation
We investigate Monte Carlo Markov Chain (MCMC) procedures for the random sampling of some one-dimensional lattice paths with constraints, for various constraints. We will see that...
Lucas Gerin
COR
2008
116views more  COR 2008»
13 years 8 months ago
Supply disruptions with time-dependent parameters
We consider a firm that faces random demand and receives product from a single supplier who faces random supply. The supplier's availability may be affected by events such as...
Andrew M. Ross, Ying Rong, Lawrence V. Snyder
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