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JCC
2011
154views more  JCC 2011»
12 years 10 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...
BMCBI
2006
145views more  BMCBI 2006»
13 years 8 months ago
Querying the public databases for sequences using complex keywords contained in the feature lines
Background: High throughput technologies often require the retrieval of large data sets of sequences. Retrieval of EMBL or GenBank entries using keywords is easy using tools such ...
Olivier Croce, Michaël Lamarre, Richard Chris...
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
IBIS
2006
109views more  IBIS 2006»
13 years 8 months ago
Formulation Schema Matching Problem for Combinatorial Optimization Problem
: Schema matching is the task of finding semantic correspondences between elements of two schemas, which plays a key role in many database applications. In this paper, we cast the ...
Zhi Zhang, Pengfei Shi, Haoyang Che, Yong Sun, Jun...
ANTSW
2008
Springer
13 years 10 months ago
Molecular Structure Elucidation Using Ant Colony Optimization: A Preliminary Study
Abstract. Identifying the structure of unknown molecules is an important activity in the pharmaceutical industry where it underpins the production of new drugs and the analysis of ...
Caroline Farrelly, Douglas B. Kell, Joshua D. Know...