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RECOMB
2003
Springer
14 years 9 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
BMCBI
2006
249views more  BMCBI 2006»
13 years 9 months ago
Gene functional similarity search tool (GFSST)
Background: With the completion of the genome sequences of human, mouse, and other species and the advent of high throughput functional genomic research technologies such as biomi...
Peisen Zhang, Jinghui Zhang, Huitao Sheng, James J...
ER
2004
Springer
144views Database» more  ER 2004»
14 years 2 months ago
Expressing and Optimizing Similarity-Based Queries in SQL
Searching for similar objects (in terms of near and nearest neighbors) of a given query object from a large set is an essential task in many applications. Recent years have seen g...
Like Gao, Min Wang, Xiaoyang Sean Wang, Sriram Pad...
SIGMOD
2010
ACM
324views Database» more  SIGMOD 2010»
14 years 1 months ago
Similarity search and locality sensitive hashing using ternary content addressable memories
Similarity search methods are widely used as kernels in various data mining and machine learning applications including those in computational biology, web search/clustering. Near...
Rajendra Shinde, Ashish Goel, Pankaj Gupta, Debojy...
BMCBI
2006
164views more  BMCBI 2006»
13 years 9 months ago
BIOZON: a system for unification, management and analysis of heterogeneous biological data
Integration of heterogeneous data types is a challenging problem, especially in biology, where the number of databases and data types increase rapidly. Amongst the problems that o...
Aaron Birkland, Golan Yona