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» On Sequence Prediction for Arbitrary Measures
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RECOMB
2003
Springer
14 years 8 months ago
A multi-expert system for the automatic detection of protein domains from sequence information
We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
Niranjan Nagarajan, Golan Yona
OSDI
2006
ACM
14 years 7 months ago
iPlane: An Information Plane for Distributed Services
In this paper, we present the design, implementation, and evaluation of iPlane, a scalable service providing accurate predictions of Internet path performance for emerging overlay...
Harsha V. Madhyastha, Tomas Isdal, Michael Piatek,...
CORR
2006
Springer
101views Education» more  CORR 2006»
13 years 7 months ago
MDL Convergence Speed for Bernoulli Sequences
The Minimum Description Length principle for online sequence estimation/prediction in a proper learning setup is studied. If the underlying model class is discrete, then the total...
Jan Poland, Marcus Hutter
BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
BIOINFORMATICS
2010
87views more  BIOINFORMATICS 2010»
13 years 7 months ago
Improving protein secondary structure prediction using a simple k-mer model
Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...