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» On Sequence Prediction for Arbitrary Measures
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BMCBI
2008
104views more  BMCBI 2008»
13 years 7 months ago
Evolutionary Pareto-optimization of stably folding peptides
Background: As a rule, peptides are more flexible and unstructured than proteins with their substantial stabilizing hydrophobic cores. Nevertheless, a few stably folding peptides ...
Wolfram Gronwald, Tim Hohm, Daniel Hoffmann
EXPCS
2007
13 years 11 months ago
Analysis of input-dependent program behavior using active profiling
Utility programs, which perform similar and largely independent operations on a sequence of inputs, include such common applications as compilers, interpreters, and document parse...
Xipeng Shen, Michael L. Scott, Chengliang Zhang, S...
BIBM
2008
IEEE
142views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Using Global Sequence Similarity to Enhance Biological Sequence Labeling
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...
Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasa...
COLT
2003
Springer
14 years 23 days ago
Sequence Prediction Based on Monotone Complexity
This paper studies sequence prediction based on the monotone Kolmogorov complexity Km=−log m, i.e. based on universal deterministic/one-part MDL. m is extremely close to Solomon...
Marcus Hutter
BIBM
2010
IEEE
139views Bioinformatics» more  BIBM 2010»
13 years 5 months ago
Scalable, updatable predictive models for sequence data
The emergence of data rich domains has led to an exponential growth in the size and number of data repositories, offering exciting opportunities to learn from the data using machin...
Neeraj Koul, Ngot Bui, Vasant Honavar