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» On The Closest String and Substring Problems
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CSR
2006
Springer
13 years 11 months ago
All Semi-local Longest Common Subsequences in Subquadratic Time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, w...
Alexandre Tiskin
SPIRE
2007
Springer
14 years 1 months ago
Approximate String Matching with Lempel-Ziv Compressed Indexes
Abstract. A compressed full-text self-index for a text T is a data structure requiring reduced space and able of searching for patterns P in T. Furthermore, the structure can repro...
Luís M. S. Russo, Gonzalo Navarro, Arlindo ...
DIS
2001
Springer
14 years 1 days ago
A Practical Algorithm to Find the Best Episode Patterns
Episode pattern is a generalized concept of subsequence pattern where the length of substring containing the subsequence is bounded. Given two sets of strings, consider an optimiza...
Masahiro Hirao, Shunsuke Inenaga, Ayumi Shinohara,...
CPM
2000
Springer
160views Combinatorics» more  CPM 2000»
13 years 12 months ago
Approximation Algorithms for Hamming Clustering Problems
We study Hamming versions of two classical clustering problems. The Hamming radius p-clustering problem (HRC) for a set S of k binary strings, each of length n, is to find p bina...
Leszek Gasieniec, Jesper Jansson, Andrzej Lingas
DIS
2004
Springer
14 years 28 days ago
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance
We consider the problem of discovering the optimal pair of substring patterns with bounded distance α, from a given set S of strings. We study two kinds of pattern classes, one is...
Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö,...