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» On Timed Models of Gene Networks
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JMLR
2006
118views more  JMLR 2006»
13 years 8 months ago
Learning Factor Graphs in Polynomial Time and Sample Complexity
We study the computational and sample complexity of parameter and structure learning in graphical models. Our main result shows that the class of factor graphs with bounded degree...
Pieter Abbeel, Daphne Koller, Andrew Y. Ng
DSN
2007
IEEE
14 years 2 months ago
How to Choose a Timing Model?
When employing a consensus algorithm for state machine replication, should one optimize for the case that all communication links are usually timely, or for fewer timely links? Do...
Idit Keidar, Alexander Shraer
ACMSE
2005
ACM
14 years 1 months ago
Heuristics for dependency conjectures in proteomic signaling pathways
A key issue in the study of protein signaling networks is understanding the relationships among proteins in the network. Understanding these relationships in the context of a netw...
Edward E. Allen, Jacquelyn S. Fetrow, David J. Joh...
EUROGP
2006
Springer
140views Optimization» more  EUROGP 2006»
13 years 11 months ago
Evolving Noisy Oscillatory Dynamics in Genetic Regulatory Networks
We introduce a genetic programming (GP) approach for evolving genetic networks that demonstrate desired dynamics when simulated as a discrete stochastic process. Our representation...
André Leier, P. Dwight Kuo, Wolfgang Banzha...
EVOW
2007
Springer
14 years 2 months ago
Modeling the Shoot Apical Meristem in A. thaliana : Parameter Estimation for Spatial Pattern Formation
Understanding the self-regulatory mechanisms controlling the spatial and temporal structure of multicellular organisms represents one of the major challenges in molecular biology. ...
Tim Hohm, Eckart Zitzler