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» On a Parallel Extended Euclidean Algorithm
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BMCBI
2008
228views more  BMCBI 2008»
13 years 8 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
ICMLA
2010
13 years 5 months ago
Smoothing Gene Expression Using Biological Networks
Gene expression (microarray) data have been used widely in bioinformatics. The expression data of a large number of genes from small numbers of subjects are used to identify inform...
Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi
FSTTCS
2003
Springer
14 years 1 months ago
Reachability Analysis of Process Rewrite Systems
We define a new model called O-PRS that extends the Process Rewrite Systems formalism with a new associative operator, “ ”, that allows to model parallel composition while ke...
Ahmed Bouajjani, Tayssir Touili
IPPS
2002
IEEE
14 years 23 days ago
Generalized Multipartitioning for Multi-Dimensional Arrays
Multipartitioning is a strategy for parallelizing computations that require solving 1D recurrences along each dimension of a multi-dimensional array. Previous techniques for multi...
Daniel G. Chavarría-Miranda, Alain Darte, R...
HPDC
2010
IEEE
13 years 9 months ago
LogGOPSim: simulating large-scale applications in the LogGOPS model
We introduce LogGOPSim--a fast simulation framework for parallel algorithms at large-scale. LogGOPSim utilizes a slightly extended version of the well-known LogGPS model in combin...
Torsten Hoefler, Timo Schneider, Andrew Lumsdaine