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» On numbers of Davenport-Schinzel sequences
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BMCBI
2011
13 years 2 months ago
Removing Noise From Pyrosequenced Amplicons
Background: In many environmental genomics applications a homologous region of DNA from a diverse sample is first amplified by PCR and then sequenced. The next generation sequenci...
Christopher Quince, Anders Lanzén, Russell ...
GECCO
2003
Springer
128views Optimization» more  GECCO 2003»
14 years 18 days ago
Evolving Consensus Sequence for Multiple Sequence Alignment with a Genetic Algorithm
In this paper we present an approach that evolves the consensus sequence [25] for multiple sequence alignment (MSA) with genetic algorithm (GA). We have developed an encoding schem...
Conrad Shyu, James A. Foster
BMCBI
2010
155views more  BMCBI 2010»
13 years 4 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
LCTRTS
2010
Springer
13 years 5 months ago
Improving both the performance benefits and speed of optimization phase sequence searches
The issues of compiler optimization phase ordering and selection present important challenges to compiler developers in several domains, and in particular to the speed, code size,...
Prasad A. Kulkarni, Michael R. Jantz, David B. Wha...
COMBINATORICS
2006
92views more  COMBINATORICS 2006»
13 years 7 months ago
Meta-Fibonacci Sequences, Binary Trees and Extremal Compact Codes
We consider a family of meta-Fibonacci sequences which arise in studying the number of leaves at the largest level in certain infinite sequences of binary trees, restricted compos...
Brad Jackson, Frank Ruskey