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» On predicting secondary structure transition
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ISMB
2004
13 years 10 months ago
Predicting protein folding pathways
Keywords PRIMARY: protein structure comparison SECONDARY: protein structure prediction OTHER: protein folding pathway
Mohammed Javeed Zaki, Vinay Nadimpally, Deb Bardha...
RECOMB
2005
Springer
14 years 9 months ago
Consensus Folding of Unaligned RNA Sequences Revisited
As one of the earliest problems in computational biology, RNA secondary structure prediction (sometimes referred to as "RNA folding") problem has attracted attention agai...
Vineet Bafna, Haixu Tang, Shaojie Zhang
BIOCOMP
2006
13 years 10 months ago
Statistical Analysis of Long-Range Interactions in Proteins
We carry out a comprehensive study of long-range interactions on a large data set of non-homologous proteins. Our study reveals that the long-range interactions between amino acid...
Jinmiao Chen, Narendra S. Chaudhari
ISBRA
2007
Springer
14 years 3 months ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie
BMCBI
2006
105views more  BMCBI 2006»
13 years 9 months ago
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
Background: One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive unde...
Akira R. Kinjo, Ken Nishikawa