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» On predicting secondary structure transition
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BMCBI
2010
163views more  BMCBI 2010»
13 years 9 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek
UM
2001
Springer
14 years 1 months ago
Using Markov Chains for Structural Link Prediction in Adaptive Web Sites
My research investigates into using Markov chains to make link prediction and the transition matrix derived from Markov chains to acquire structural knowledge about Web sites. The ...
Jianhan Zhu
BMCBI
2010
150views more  BMCBI 2010»
13 years 9 months ago
Automatic structure classification of small proteins using random forest
Background: Random forest, an ensemble based supervised machine learning algorithm, is used to predict the SCOP structural classification for a target structure, based on the simi...
Pooja Jain, Jonathan D. Hirst
ISMB
2000
13 years 10 months ago
Search for a New Description of Protein Topology and Local Structure
A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
Lukasz Jaroszewski, Adam Godzik
CIKM
2009
Springer
14 years 3 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim