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» On some Properties of DNA Graphs
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JSS
2010
89views more  JSS 2010»
13 years 2 months ago
Verification and validation of declarative model-to-model transformations through invariants
In this paper we propose a method to derive OCL invariants from declarative model-to-model transformations in order to enable their verification and analysis. For this purpose we ...
Jordi Cabot, Robert Clarisó, Esther Guerra,...
IDA
2003
Springer
14 years 1 months ago
Similarity-Based Neural Networks for Applications in Computational Molecular Biology
This paper presents an alternative to distance-based neural networks. A distance measure is the underlying property on which many neural models rely, for example self-organizing ma...
Igor Fischer
BMCBI
2005
147views more  BMCBI 2005»
13 years 7 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
IC
2003
13 years 9 months ago
Sampling Internet Topologies: How Small Can We Go?
Abstract— In this paper, we develop methods to “sample” a large real network into a small realistic graph. Although topology modeling has received a lot attention lately, it ...
Vaishnavi Krishnamurthy, Junhong Sun, Michalis Fal...
BMCBI
2008
96views more  BMCBI 2008»
13 years 8 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown