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» On some Properties of DNA Graphs
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ACTA
2007
126views more  ACTA 2007»
13 years 8 months ago
The syntactic monoid of hairpin-free languages
The study of hairpin-free words has been initiated in the context of DNA computing. DNA strands that, theoretically speaking, are finite strings over the alphabet {A, G, C, T} are...
Lila Kari, Kalpana Mahalingam, Gabriel Thierrin
WAW
2009
Springer
138views Algorithms» more  WAW 2009»
14 years 2 months ago
Information Theoretic Comparison of Stochastic Graph Models: Some Experiments
The Modularity-Q measure of community structure is known to falsely ascribe community structure to random graphs, at least when it is naively applied. Although Q is motivated by a ...
Kevin J. Lang
EC
1998
112views ECommerce» more  EC 1998»
13 years 7 months ago
DNA Computation: Theory, Practice, and Prospects
L. M. Adleman launched the field of DNA computing with a demonstration in 1994 that strands of DNA could be used to solve the Hamiltonian path problem for a simple graph. He also...
Carlo C. Maley
ENTCS
2008
98views more  ENTCS 2008»
13 years 8 months ago
Modal Expressiveness of Graph Properties
Graphs are among the most frequently used structures in Computer Science. In this work, we analyze how we can express some important graph properties such as connectivity, acyclic...
Mario R. F. Benevides, L. Menasché Schechte...
DNA
2005
Springer
117views Bioinformatics» more  DNA 2005»
14 years 1 months ago
Simple Operations for Gene Assembly
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...