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» On some relations between 2-trees and tree metrics
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CPC
2004
98views more  CPC 2004»
13 years 7 months ago
And/Or Trees Revisited
We consider boolean functions over n variables. Any such function can be represented (and computed) by a complete binary tree with and or or in the internal nodes and a literal in...
Brigitte Chauvin, Philippe Flajolet, Danièl...
BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
Reconstructing genome trees of prokaryotes using overlapping genes
Background: Overlapping genes (OGs) are defined as adjacent genes whose coding sequences overlap partially or entirely. In fact, they are ubiquitous in microbial genomes and more ...
Chih-Hsien Cheng, Chung-Han Yang, Hsien-Tai Chiu, ...
BNCOD
2004
184views Database» more  BNCOD 2004»
13 years 9 months ago
Bulk Loading the M-Tree to Enhance Query Performance
The M-tree is a paged, dynamically balanced metric access method that responds gracefully to the insertion of new objects. Like many spatial access methods, the M-tree's perfo...
Alan P. Sexton, Richard Swinbank
BMCBI
2008
142views more  BMCBI 2008»
13 years 7 months ago
Strategies for measuring evolutionary conservation of RNA secondary structures
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. ...
JACM
2006
99views more  JACM 2006»
13 years 7 months ago
Finding a maximum likelihood tree is hard
Abstract. Maximum likelihood (ML) is an increasingly popular optimality criterion for selecting evolutionary trees [Felsenstein 1981]. Finding optimal ML trees appears to be a very...
Benny Chor, Tamir Tuller