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BMCBI
2010
178views more  BMCBI 2010»
13 years 8 months ago
An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
Shobhit Jain, Gary D. Bader
IPPS
2010
IEEE
13 years 6 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
BMCBI
2011
13 years 3 months ago
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
Background: Methods of determining whether or not any particular HIV-1 sequence stems - completely or in part - from some unknown HIV-1 subtype are important for the design of vac...
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bull...
GECCO
2008
Springer
206views Optimization» more  GECCO 2008»
13 years 9 months ago
Improving accuracy of immune-inspired malware detectors by using intelligent features
In this paper, we show that a Bio-inspired classifier’s accuracy can be dramatically improved if it operates on intelligent features. We propose a novel set of intelligent feat...
M. Zubair Shafiq, Syed Ali Khayam, Muddassar Faroo...
CASES
2009
ACM
14 years 2 months ago
Optimal loop parallelization for maximizing iteration-level parallelism
This paper solves the open problem of extracting the maximal number of iterations from a loop that can be executed in parallel on chip multiprocessors. Our algorithm solves it opt...
Duo Liu, Zili Shao, Meng Wang, Minyi Guo, Jingling...