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    BMCBI
    2005
    94views more  BMCBI 2005»
    Measuring similarities between transcription factor binding sites
    13 years 9 months ago
    Measuring similarities between transcription factor binding sites
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    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    BMCBI
    2005
    115views more  BMCBI 2005»
    Statistical distributions of optimal global alignment scores of random protein sequences
    13 years 9 months ago
    Statistical distributions of optimal global alignment scores of random protein sequences
    Download  www.biomedcentral.com
    Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
    Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
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    BMCBI
    2005
    169views more  BMCBI 2005»
    Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
    13 years 9 months ago
    Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
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    Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
    Yan Qi 0003, Ping Ye, Joel S. Bader
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    BMCBI
    2005
    100views more  BMCBI 2005»
    Scoredist: A simple and robust protein sequence distance estimator
    13 years 9 months ago
    Scoredist: A simple and robust protein sequence distance estimator
    Download  sonnhammer.sbc.su.se
    Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
    Erik L. L. Sonnhammer, Volker Hollich
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    BMCBI
    2005
    147views more  BMCBI 2005»
    Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants
    13 years 9 months ago
    Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants
    Download  www.biomedcentral.com
    Background: Peptide Mass Fingerprinting (PMF) is a widely used mass spectrometry (MS) method of analysis of proteins and peptides. It relies on the comparison between experimental...
    Witold E. Wolski, Maciej Lalowski, Peter Jungblut,...
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