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» On the Complexity of Function Learning
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BMCBI
2010
185views more  BMCBI 2010»
13 years 2 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
BMCBI
2011
13 years 2 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
BMCBI
2011
13 years 2 months ago
A novel approach to the clustering of microarray data via nonparametric density estimation
Background: Cluster analysis is a crucial tool in several biological and medical studies dealing with microarray data. Such studies pose challenging statistical problems due to di...
Riccardo De Bin, Davide Risso
CORR
2011
Springer
167views Education» more  CORR 2011»
13 years 2 months ago
On Quadratic Programming with a Ratio Objective
Quadratic Programming (QP) is the well-studied problem of maximizing over {−1, 1} values the quadratic form i=j aijxixj. QP captures many known combinatorial optimization proble...
Aditya Bhaskara, Moses Charikar, Rajsekar Manokara...
CORR
2011
Springer
202views Education» more  CORR 2011»
13 years 2 months ago
High Degree Vertices, Eigenvalues and Diameter of Random Apollonian Networks
ABSTRACT. Upon the discovery of power laws [8, 16, 30], a large body of work in complex network analysis has focused on developing generative models of graphs which mimick real-wor...
Alan M. Frieze, Charalampos E. Tsourakakis
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