Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
Background: Cluster analysis is a crucial tool in several biological and medical studies dealing with microarray data. Such studies pose challenging statistical problems due to di...
Quadratic Programming (QP) is the well-studied problem of maximizing over {−1, 1} values the quadratic form i=j aijxixj. QP captures many known combinatorial optimization proble...
ABSTRACT. Upon the discovery of power laws [8, 16, 30], a large body of work in complex network analysis has focused on developing generative models of graphs which mimick real-wor...