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» On the Complexity of Model Expansion
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RECOMB
2005
Springer
14 years 11 months ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
RECOMB
2005
Springer
14 years 11 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
RECOMB
2003
Springer
14 years 11 months ago
Large scale reconstruction of haplotypes from genotype data
Critical to the understanding of the genetic basis for complex diseases is the modeling of human variation. Most of this variation can be characterized by single nucleotide polymo...
Eleazar Eskin, Eran Halperin, Richard M. Karp
STOC
2004
ACM
121views Algorithms» more  STOC 2004»
14 years 11 months ago
Lower bounds for dynamic connectivity
We prove an (lg n) cell-probe lower bound on maintaining connectivity in dynamic graphs, as well as a more general trade-off between updates and queries. Our bound holds even if t...
Mihai Patrascu, Erik D. Demaine
ICALP
2009
Springer
14 years 11 months ago
Annotations in Data Streams
The central goal of data stream algorithms is to process massive streams of data using sublinear storage space. Motivated by work in the database community on outsourcing database...
Amit Chakrabarti, Graham Cormode, Andrew McGregor
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