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» On the Complexity of the Whitehead Minimization Problem
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USENIX
1990
13 years 8 months ago
Efficient User-Level File Cache Management on the Sun Vnode Interface
In developing a distributed file system, there are several good reasons for implementing the client file cache manager as a user-level process. These include ease of implementatio...
David C. Steere, James J. Kistler, Mahadev Satyana...
BMCBI
2010
161views more  BMCBI 2010»
13 years 7 months ago
BPDA - A Bayesian peptide detection algorithm for mass spectrometry
Background: Mass spectrometry (MS) is an essential analytical tool in proteomics. Many existing algorithms for peptide detection are based on isotope template matching and usually...
Youting Sun, Jianqiu Zhang, Ulisses Braga-Neto, Ed...
CORR
2007
Springer
144views Education» more  CORR 2007»
13 years 7 months ago
Optimization of Information Rate Upper and Lower Bounds for Channels with Memory
—We consider the problem of minimizing upper bounds and maximizing lower bounds on information rates of stationary and ergodic discrete-time channels with memory. The channels we...
Parastoo Sadeghi, Pascal O. Vontobel, Ramtin Shams
BMCBI
2005
109views more  BMCBI 2005»
13 years 7 months ago
Automation of gene assignments to metabolic pathways using high-throughput expression data
Background: Accurate assignment of genes to pathways is essential in order to understand the functional role of genes and to map the existing pathways in a given genome. Existing ...
Liviu Popescu, Golan Yona
BMCBI
2004
151views more  BMCBI 2004»
13 years 7 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich