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» On the Computational Power of Biochemistry
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BMCBI
2010
202views more  BMCBI 2010»
13 years 9 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2007
216views more  BMCBI 2007»
13 years 9 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
SIGMETRICS
2012
ACM
290views Hardware» more  SIGMETRICS 2012»
12 years 3 days ago
Power and energy containers for multicore servers
Energy efficiency and power capping remain growing concerns in server systems. Online applications continue to evolve with new features and dynamic clientdirected processing, res...
Kai Shen, Arrvindh Shriraman, Sandhya Dwarkadas, X...
INFOCOM
2012
IEEE
12 years 4 days ago
CARPO: Correlation-aware power optimization in data center networks
—Power optimization has become a key challenge in the design of large-scale enterprise data centers. Existing research efforts focus mainly on computer servers to lower their ene...
Xiaodong Wang, Yanjun Yao, Xiaorui Wang, Kefa Lu, ...
HPCA
2000
IEEE
14 years 2 months ago
PowerMANNA: A Parallel Architecture Based on the PowerPC MPC620
The paper presents PowerMANNA - a distributed-memory parallel computer system based on the 64-Bit PowerPC processor MPC620. The PowerMANNA node architecture supports all the sophi...
Peter M. Behr, S. Pletner, Angela C. Sodan