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» On the Computational Power of Biochemistry
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CMSB
2009
Springer
14 years 4 months ago
Dynamic Compartments in the Imperative pi-Calculus
Dynamic compartments with mutable configurations and variable volumes are of basic interest for the stochastic modeling of biochemistry in cells. We propose a new language to expr...
Mathias John, Cédric Lhoussaine, Joachim Ni...
ICCS
2004
Springer
14 years 3 months ago
Evolutionary Perspectives on Protein Thermodynamics
While modern evolutionary theory has emphasized the role of neutral evolution, protein biochemistry and biophysics has interpreted the properties of proteins as largely resulting f...
Richard A. Goldstein
HAPTICS
2007
IEEE
14 years 4 months ago
Time-Based Haptic Analysis of Protein Dynamics
We present a new approach for evaluating a protein’s simulated trajectory via time-based haptic feedback. Molecular-scale trajectories are highly dynamic and thus pose new deman...
Katrin Bidmon, Guido Reina, Fabian Bös, J&uum...
IPPS
1998
IEEE
14 years 1 months ago
Using PI/OT to Support Complex Parallel I/O
This paper describes PI/OT, a template-based parallel I/O system. In PI/OT, I/O streams have annotations associated with them that are external to the source code. These annotatio...
Ian Parsons, Jonathan Schaeffer, Duane Szafron, Ro...
SOFSEM
2012
Springer
12 years 5 months ago
Iterated Hairpin Completions of Non-crossing Words
Abstract. Iterated hairpin completion is an operation on formal languages that is inspired by the hairpin formation in DNA biochemistry. Iterated hairpin completion of a word (or m...
Lila Kari, Steffen Kopecki, Shinnosuke Seki