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WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
13 years 6 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
JCPHY
2011
192views more  JCPHY 2011»
12 years 11 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
ASIACRYPT
2011
Springer
12 years 8 months ago
The Leakage-Resilience Limit of a Computational Problem Is Equal to Its Unpredictability Entropy
A cryptographic assumption is the (unproven) mathematical statement that a certain computational problem (e.g. factoring integers) is computationally hard. The leakage-resilience l...
Divesh Aggarwal, Ueli Maurer
CLUSTER
2009
IEEE
14 years 3 months ago
Power-aware scheduling of virtual machines in DVFS-enabled clusters
—With the advent of Cloud computing, large-scale virtualized compute and data centers are becoming common in the computing industry. These distributed systems leverage commodity ...
Gregor von Laszewski, Lizhe Wang, Andrew J. Younge...
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 3 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...