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» On the Maximum Number of Cliques in a Graph
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RECOMB
2010
Springer
14 years 2 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
13 years 11 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...
CPM
2005
Springer
116views Combinatorics» more  CPM 2005»
14 years 1 months ago
Exact and Approximation Algorithms for DNA Tag Set Design
In this paper we propose new solution methods for designing tag sets for use in universal DNA arrays. First, we give integer linear programming formulations for two previous formal...
Ion I. Mandoiu, Dragos Trinca
ICC
2007
IEEE
176views Communications» more  ICC 2007»
14 years 1 months ago
An Interference-Aware Channel Assignment Scheme for Wireless Mesh Networks
—Multichannel communication in a Wireless Mesh Network with routers having multiple radio interfaces significantly enhances the network capacity. Efficient channel assignment an...
Arunabha Sen, Sudheendra Murthy, Samrat Ganguly, S...
FCS
2009
13 years 5 months ago
Domination and Independence on the Rectangular Torus by Rooks and Bishops
A set S V is a dominating set of a graph G = (V; E) if each vertex in V is either in S or is adjacent to a vertex in S. A vertex is said to dominate itself and all its neighbors. ...
Joe DeMaio, William Faust