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» On the Repeat-Annotated Phylogenetic Tree Reconstruction Pro...
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ICPP
2009
IEEE
14 years 3 months ago
Load Balance in the Phylogenetic Likelihood Kernel
—Recent advances in DNA sequencing techniques have led to an unprecedented accumulation and availability of molecular sequence data that needs to be analyzed. This data explosion...
Alexandros Stamatakis, Michael Ott
NIPS
2008
13 years 10 months ago
Efficient Inference in Phylogenetic InDel Trees
Accurate and efficient inference in evolutionary trees is a central problem in computational biology. While classical treatments have made unrealistic site independence assumption...
Alexandre Bouchard-Côté, Michael I. J...
DAGSTUHL
2008
13 years 10 months ago
Constraint Satisfaction Problems with Infinite Templates
Allowing templates with infinite domains greatly expands the range of problems that can be formulated as a non-uniform constraint satisfaction problem. It turns out that many CSPs ...
Manuel Bodirsky
RECOMB
2005
Springer
14 years 8 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
ISBRA
2010
Springer
14 years 3 months ago
Uncovering Hidden Phylogenetic Consensus
Abstract. Many of the steps in phylogenetic reconstruction can be confounded by “rogue” taxa, taxa that cannot be placed with assurance anywhere within the tree—whose locatio...
Nicholas D. Pattengale, Krister M. Swenson, Bernar...