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BMCBI
2010
175views more  BMCBI 2010»
15 years 6 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
SMI
2005
IEEE
15 years 11 months ago
Maximizing Adaptivity in Hierarchical Topological Models
We present an approach to hierarchically encode the topology of functions over triangulated surfaces. We describe the topology of a function by its Morse-Smale complex, a well kno...
Peer-Timo Bremer, Valerio Pascucci, Bernd Hamann
ROOM
2000
15 years 7 months ago
Checking the Consistency of UML Class Diagrams Using Larch Prover
The Unified Modeling Language (UML) has been designed to be a full standard notation for Object-Oriented Modelling. UML is a rather complete set of notations, but it lacks of form...
Pascal André, Annya Romanczuk, Jean-Claude ...
NAR
2007
90views more  NAR 2007»
15 years 5 months ago
The SUPERFAMILY database in 2007: families and functions
The SUPERFAMILY database provides protein domain assignments, at the SCOP ‘superfamily’ level, for the predicted protein sequences in over 400 completed genomes. A superfamily...
Derek Wilson, Martin Madera, Christine Vogel, Cyru...
NAACL
2010
15 years 4 months ago
An Efficient Algorithm for Easy-First Non-Directional Dependency Parsing
We present a novel deterministic dependency parsing algorithm that attempts to create the easiest arcs in the dependency structure first in a non-directional manner. Traditional d...
Yoav Goldberg, Michael Elhadad