Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
We present an approach to hierarchically encode the topology of functions over triangulated surfaces. We describe the topology of a function by its Morse-Smale complex, a well kno...
The Unified Modeling Language (UML) has been designed to be a full standard notation for Object-Oriented Modelling. UML is a rather complete set of notations, but it lacks of form...
The SUPERFAMILY database provides protein domain assignments, at the SCOP ‘superfamily’ level, for the predicted protein sequences in over 400 completed genomes. A superfamily...
Derek Wilson, Martin Madera, Christine Vogel, Cyru...
We present a novel deterministic dependency parsing algorithm that attempts to create the easiest arcs in the dependency structure first in a non-directional manner. Traditional d...