Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
This paper proposes an extension to the XQuery language to solve the problem of positional grouping: that is, problems in which it is necessary to convert a flat sequence into a h...
The Internet and the Grid are changing the face of high performance computing. Rather than tightly-coupled SPMD-style components running in a single cluster, on a parallel machine...
ML modules are a powerful language mechanism for decomposing programs into reusable components. Unfortunately, they also have a reputation for being “complex” and requiring fa...
Solving large, irregular graph problems efficiently is challenging. Current software systems and commodity multiprocessors do not support fine-grained, irregular parallelism wel...
Guojing Cong, Sreedhar B. Kodali, Sriram Krishnamo...