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» On the analysis of interacting pushdown systems
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BMCBI
2006
180views more  BMCBI 2006»
13 years 10 months ago
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Background: Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these tools typically excels at one type of an...
Paul T. Shannon, David J. Reiss, Richard Bonneau, ...
BMCBI
2011
13 years 1 months ago
Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks v
Background: Constraint-based approaches facilitate the prediction of cellular metabolic capabilities, based, in turn on predictions of the repertoire of enzymes encoded in the gen...
Jacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwoz...
TCS
2008
13 years 10 months ago
GemCell: A generic platform for modeling multi-cellular biological systems
The mass and complexity of biological information requires computer-aided simulation and analysis to help scientists achieve understanding and guide experimentation. Although livi...
Hila Amir-Kroll, Avital Sadot, Irun R. Cohen, Davi...
ENVSOFT
2007
108views more  ENVSOFT 2007»
13 years 10 months ago
Modeling biocomplexity - actors, landscapes and alternative futures
: Increasingly, models (and modelers) are being asked to address the interactions between human influences, ecological processes, and landscape dynamics that impact many diverse as...
John P. Bolte, David W. Hulse, Stanley V. Gregory,...
CADE
2004
Springer
14 years 10 months ago
Dr.Doodle: A Diagrammatic Theorem Prover
This paper presents the Dr.Doodle system, an interactive theorem prover that uses diagrammatic representations. The assumption underlying this project is that, for some domains (pr...
Daniel Winterstein, Alan Bundy, Corin A. Gurr