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ASPLOS
2011
ACM
13 years 21 days ago
Hardware acceleration of transactional memory on commodity systems
The adoption of transactional memory is hindered by the high overhead of software transactional memory and the intrusive design changes required by previously proposed TM hardware...
Jared Casper, Tayo Oguntebi, Sungpack Hong, Nathan...
ASPLOS
2011
ACM
13 years 21 days ago
MemScale: active low-power modes for main memory
Main memory is responsible for a large and increasing fraction of the energy consumed by servers. Prior work has focused on exploiting DRAM low-power states to conserve energy. Ho...
Qingyuan Deng, David Meisner, Luiz E. Ramos, Thoma...
BMCBI
2011
13 years 21 days ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
BMCBI
2011
13 years 21 days ago
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
Background: The implementation of high throughput sequencing for exploring biodiversity poses high demands on bioinformatics applications for automated data processing. Here we in...
Surendra Kumar, Tor Carlsen, Bjørn-Helge Me...
BMCBI
2011
13 years 21 days ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
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