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» On the distance between the expressions of a permutation
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OL
2010
185views more  OL 2010»
13 years 6 months ago
On the Hamming distance in combinatorial optimization problems on hypergraph matchings
In this note we consider the properties of the Hamming distance in combinatorial optimization problems on hypergraph matchings, also known as multidimensional assignment problems....
Alla R. Kammerdiner, Pavlo A. Krokhmal, Panos M. P...
BIOINFORMATICS
2007
137views more  BIOINFORMATICS 2007»
13 years 7 months ago
Annotation-based distance measures for patient subgroup discovery in clinical microarray studies
: Background Clustering algorithms are widely used in the analysis of microarray data. In clinical studies, they are often applied to find groups of co-regulated genes. Clustering...
Claudio Lottaz, Joern Toedling, Rainer Spang
IPL
2006
80views more  IPL 2006»
13 years 7 months ago
BubbleSearch: A simple heuristic for improving priority-based greedy algorithms
We introduce BubbleSearch, a general approach for extending priority-based greedy heuristics. Following the framework recently developed by Borodin et al., we consider priority al...
Neal Lesh, Michael Mitzenmacher
BMCBI
2011
12 years 11 months ago
Gene set analysis for longitudinal gene expression data
Background: Gene set analysis (GSA) has become a successful tool to interpret gene expression profiles in terms of biological functions, molecular pathways, or genomic locations. ...
Ke Zhang, Haiyan Wang, Arne C. Bathke, Solomon W. ...
ICASSP
2008
IEEE
14 years 2 months ago
Probabilistic framework for gene expression clustering validation based on gene ontology and graph theory
Based on the correlation between expression and ontologydriven gene similarity, we incorporate functional annotations into gene expression clustering validation. A probabilistic f...
Yinyin Yuan, Chang-Tsun Li