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BMCBI
2008
142views more  BMCBI 2008»
13 years 9 months ago
Strategies for measuring evolutionary conservation of RNA secondary structures
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. ...
ALGORITHMICA
2005
195views more  ALGORITHMICA 2005»
13 years 8 months ago
Bit-Parallel Witnesses and Their Applications to Approximate String Matching
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
Heikki Hyyrö, Gonzalo Navarro
INFOCOM
2010
IEEE
13 years 7 months ago
Fuzzy Keyword Search over Encrypted Data in Cloud Computing
—As Cloud Computing becomes prevalent, more and more sensitive information are being centralized into the cloud. For the protection of data privacy, sensitive data usually have t...
Jin Li, Qian Wang, Cong Wang, Ning Cao, Kui Ren, W...
TASLP
2008
122views more  TASLP 2008»
13 years 7 months ago
Challenging Uncertainty in Query by Humming Systems: A Fingerprinting Approach
Robust data retrieval in the presence of uncertainty is a challenging problem in multimedia information retrieval. In query-by-humming (QBH) systems, uncertainty can arise in query...
Erdem Unal, Elaine Chew, Panayiotis G. Georgiou, S...
BMCBI
2010
143views more  BMCBI 2010»
13 years 6 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison