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SODA
2003
ACM
106views Algorithms» more  SODA 2003»
13 years 9 months ago
Maintaining all-pairs approximate shortest paths under deletion of edges
We present a hierarchical scheme for efficiently maintaining all-pairs approximate shortest-paths in undirected unweighted graphs under deletions of edges. An α-approximate short...
Surender Baswana, Ramesh Hariharan, Sandeep Sen
BMCBI
2010
183views more  BMCBI 2010»
13 years 7 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2008
96views more  BMCBI 2008»
13 years 7 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
CORR
2010
Springer
249views Education» more  CORR 2010»
13 years 7 months ago
Lower Bounds on Near Neighbor Search via Metric Expansion
In this paper we show how the complexity of performing nearest neighbor (NNS) search on a metric space is related to the expansion of the metric space. Given a metric space we loo...
Rina Panigrahy, Kunal Talwar, Udi Wieder
CORR
2008
Springer
138views Education» more  CORR 2008»
13 years 7 months ago
Computing Minimum Spanning Trees with Uncertainty
Abstract. We consider the minimum spanning tree problem in a setting where information about the edge weights of the given graph is uncertain. Initially, for each edge e of the gra...
Thomas Erlebach, Michael Hoffmann 0002, Danny Kriz...