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» On the maximum quartet distance between phylogenetic trees
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STACS
2001
Springer
14 years 2 months ago
Approximation Algorithms for the Bottleneck Stretch Factor Problem
The stretch factor of a Euclidean graph is the maximum ratio of the distance in the graph between any two points and their Euclidean distance. Given a set S of n points in Rd, we ...
Giri Narasimhan, Michiel H. M. Smid
BMCBI
2008
96views more  BMCBI 2008»
13 years 10 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
ICDE
2010
IEEE
371views Database» more  ICDE 2010»
14 years 9 months ago
TASM: Top-k Approximate Subtree Matching
Abstract-- We consider the Top-k Approximate Subtree Matching (TASM) problem: finding the k best matches of a small query tree, e.g., a DBLP article with 15 nodes, in a large docum...
Nikolaus Augsten, Denilson Barbosa, Michael H. B&o...
BMCBI
2005
100views more  BMCBI 2005»
13 years 9 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich
BMCBI
2010
145views more  BMCBI 2010»
13 years 10 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...