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TCS
2008
13 years 7 months ago
Competitive graph searches
We exemplify an optimization criterion for divide-and-conquer algorithms with a technique called generic competitive graph search. The technique is then applied to solve two probl...
Binh-Minh Bui-Xuan, Michel Habib, Christophe Paul
BMCBI
2005
89views more  BMCBI 2005»
13 years 7 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg
JBCB
2007
161views more  JBCB 2007»
13 years 7 months ago
On Cooperative Quasi-Equilibrium Models of transcriptional Regulation
Mechanistic models for transcriptional regulation are derived using the methods of equilibrium statistical mechanics, to model equilibrating processes that occur at a fast time sc...
Eric Mjolsness
JC
2007
160views more  JC 2007»
13 years 7 months ago
BDDC methods for discontinuous Galerkin discretization of elliptic problems
A discontinuous Galerkin (DG) discretization of Dirichlet problem for second-order elliptic equations with discontinuous coefficients in 2-D is considered. For this discretization...
Maksymilian Dryja, Juan Galvis, Marcus Sarkis
TON
2008
103views more  TON 2008»
13 years 7 months ago
On the race of worms, alerts, and patches
We study the effectiveness of automatic patching and quantify the speed of patch or alert dissemination required for worm containment. We focus on random scanning as this is repres...
Milan Vojnovic, Ayalvadi J. Ganesh