We propose a class of Bayesian networks appropriate for structured prediction problems where the Bayesian network's model structure is a function of the predicted output stru...
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
The Valued (VCSP) framework is a generic optimization framework with a wide range of applications. Soft arc consistency operations transform a VCSP into an equivalent problem by s...
We have developed an evolutionary approach for the flexible docking that is now an important component of a rational drug design. This automatic docking tool, referred to as the G...
In this paper, we introduce a game-theoretic framework to address the community detection problem based on the structures of social networks. We formulate the dynamics of community...