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» On two variations of identifying codes
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118
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BMCBI
2008
102views more  BMCBI 2008»
15 years 3 months ago
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs
Background: Ornithine decarboxylase antizymes are proteins which negatively regulate cellular polyamine levels via their affects on polyamine synthesis and cellular uptake. In vir...
Michaël Bekaert, Ivaylo P. Ivanov, John F. At...
129
Voted
BMCBI
2006
87views more  BMCBI 2006»
15 years 3 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
149
Voted
ALMOB
2006
138views more  ALMOB 2006»
15 years 3 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
136
Voted
IPCCC
2007
IEEE
15 years 10 months ago
Application Insight Through Performance Modeling
Tuning the performance of applications requires understanding the interactions between code and target architecture. This paper describes a performance modeling approach that not ...
Gabriel Marin, John M. Mellor-Crummey
126
Voted
IPPS
1999
IEEE
15 years 8 months ago
A Factorial Performance Evaluation for Hierarchical Memory Systems
In this study, we introduce an evaluation methodology for advanced memory systems. This methodology is based on statistical factorial analysis. It is two fold: it first determines...
Xian-He Sun, Dongmei He, Kirk W. Cameron, Yong Luo