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CEC
2009
IEEE
13 years 11 months ago
JubiTool: Unified design flow for the Perplexus SIMD hardware accelerator
This paper presents a new unified design flow developed within the Perplexus project that aims to accelerate parallelizable data-intensive applications in the context of ubiquitous...
Olivier Brousse, Jérémie Guillot, Th...
ICDCS
2006
IEEE
14 years 1 months ago
ParRescue: Scalable Parallel Algorithm and Implementation for Biclustering over Large Distributed Datasets
Biclustering refers to simultaneously capturing correlations present among subsets of attributes (columns) and records (rows). It is widely used in data mining applications includ...
Jianhong Zhou, Ashfaq A. Khokhar
HPCS
2005
IEEE
14 years 1 months ago
A Lightweight, Scalable Grid Computing Framework for Parallel Bioinformatics Applications
Abstract— In recent years our society has witnessed an unprecedented growth in computing power available to tackle important problems in science, engineering and medicine. For ex...
Hans De Sterck, Rob S. Markel, Rob Knight
IPPS
2006
IEEE
14 years 1 months ago
Tree-based overlay networks for scalable applications
The increasing availability of high-performance computing systems with thousands, tens of thousands, and even hundreds of thousands of computational nodes is driving the demand fo...
Dorian C. Arnold, G. D. Pack, Barton P. Miller
IPPS
2008
IEEE
14 years 1 months ago
SWAMP: Smith-Waterman using associative massive parallelism
One of the most commonly used tools by computational biologists is some form of sequence alignment. Heuristic alignment algorithms developed for speed and their multiple results s...
Shannon Steinfadt, Johnnie W. Baker