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» Ontology Similarity in the Alignment Space
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BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
EKAW
2004
Springer
14 years 1 months ago
A Hybrid Algorithm for Alignment of Concept Hierarchies
Hierarchical categorization is a powerful and convenient method so that it is commonly used in various areas, such as ontologies. Although each hierarchy is useful, there are probl...
Ryutaro Ichise, Masahiro Hamasaki, Hideaki Takeda
IJCAI
2003
13 years 9 months ago
Comparing Best-First Search and Dynamic Programming for Optimal Multiple Sequence Alignment
Sequence alignment is an important problem in computational biology. We compare two different approaches to the problem of optimally aligning two or more character strings: bounde...
Heath Hohwald, Ignacio Thayer, Richard E. Korf
CPM
2004
Springer
86views Combinatorics» more  CPM 2004»
13 years 11 months ago
Two Algorithms for LCS Consecutive Suffix Alignment
The problem of comparing two sequences A and B to determine their similarity is one of the fundamental problems in pattern matching. A challenging, basic variation of the sequence...
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
CVPR
2010
IEEE
14 years 3 months ago
Data Fusion through Cross-modality Metric Learning using Similarity-Sensitive Hashing
Visual understanding is often based on measuring similarity between observations. Learning similarities specific to a certain perception task from a set of examples has been show...
Michael Bronstein, Alexander Bronstein, Nikos Para...