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GECCO
2010
Springer
181views Optimization» more  GECCO 2010»
14 years 1 months ago
Evolving neural networks in compressed weight space
We propose a new indirect encoding scheme for neural networks in which the weight matrices are represented in the frequency domain by sets of Fourier coefficients. This scheme exp...
Jan Koutnik, Faustino J. Gomez, Jürgen Schmid...
BMCBI
2010
149views more  BMCBI 2010»
13 years 9 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
BMCBI
2008
174views more  BMCBI 2008»
13 years 9 months ago
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Background: Inferring gene regulatory networks from data requires the development of algorithms devoted to structure extraction. When only static data are available, gene interact...
Cédric Auliac, Vincent Frouin, Xavier Gidro...
BMCBI
2008
138views more  BMCBI 2008»
13 years 9 months ago
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions
Background: Quantitative characterization of the topological characteristics of protein-protein interaction (PPI) networks can enable the elucidation of biological functional modu...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
INFOCOM
2010
IEEE
13 years 7 months ago
Pattern Mutation in Wireless Sensor Deployment
—In this paper, we study the optimal deployment pattern problem in wireless sensor networks (WSNs). We propose a new set of patterns, particularly when sensors’ communication r...
Xiaole Bai, Ziqiu Yun, Dong Xuan, Weijia Jia, Wei ...