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BMCBI
2005
306views more  BMCBI 2005»
13 years 9 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
WWW
2008
ACM
13 years 9 months ago
Divide, Compress and Conquer: Querying XML via Partitioned Path-Based Compressed Data Blocks
We propose a novel Partition Path-Based (PPB) grouping strategy to store compressed XML data in a stream of blocks. In addition, we employ a minimal indexing scheme called Block S...
Wilfred Ng, Ho Lam Lau, Aoying Zhou
CORR
2011
Springer
205views Education» more  CORR 2011»
13 years 1 months ago
Algorithms for Implicit Hitting Set Problems
A hitting set for a collection of sets is a set that has a nonempty intersection with each set in the collection; the hitting set problem is to find a hitting set of minimum card...
Karthekeyan Chandrasekaran, Richard Karp, Erick Mo...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
CONSTRAINTS
2008
117views more  CONSTRAINTS 2008»
13 years 10 months ago
Domain Specific High-Level Constraints for User Interface Layout
We present the Auckland Layout Model (ALM), a constraint-based technique for specifying 2D layout as it is used for arranging the controls in a GUI. Most GUI frameworks offer layo...
Christof Lutteroth, Robert Strandh, Gerald Weber