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» Optimal detection of sequence similarity by local alignment
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BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ICSM
2007
IEEE
14 years 2 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
BMCBI
2006
113views more  BMCBI 2006»
13 years 7 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
SCIA
2005
Springer
211views Image Analysis» more  SCIA 2005»
14 years 1 months ago
Perception-Action Based Object Detection from Local Descriptor Combination and Reinforcement Learning
This work proposes to learn visual encodings of attention patterns that enables sequential attention for object detection in real world environments. The system embeds a saccadic d...
Lucas Paletta, Gerald Fritz, Christin Seifert
EMMCVPR
2005
Springer
14 years 1 months ago
Extraction of Layers of Similar Motion Through Combinatorial Techniques
In this paper we present a new technique to extract layers in a video sequence. To this end, we assume that the observed scene is composed of several transparent layers, that their...
Romain Dupont, Nikos Paragios, Renaud Keriven, Phi...