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» Optimal detection of sequence similarity by local alignment
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BMCBI
2004
131views more  BMCBI 2004»
13 years 8 months ago
Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma
Background: Rhabdomyosarcoma is a relatively common tumour of the soft tissue, probably due to regulatory disruption of growth and differentiation of skeletal muscle stem cells. I...
Andrea Bisognin, Stefania Bortoluzzi, Gian Antonio...
FPL
2008
Springer
150views Hardware» more  FPL 2008»
13 years 10 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
SIGIR
2004
ACM
14 years 2 months ago
Locality preserving indexing for document representation
Document representation and indexing is a key problem for document analysis and processing, such as clustering, classification and retrieval. Conventionally, Latent Semantic Index...
Xiaofei He, Deng Cai, Haifeng Liu, Wei-Ying Ma
ICDE
2003
IEEE
247views Database» more  ICDE 2003»
14 years 10 months ago
CLUSEQ: Efficient and Effective Sequence Clustering
Analyzing sequence data has become increasingly important recently in the area of biological sequences, text documents, web access logs, etc. In this paper, we investigate the pro...
Jiong Yang, Wei Wang 0010
RECOMB
2005
Springer
14 years 9 months ago
Recognition of Binding Patterns Common to a Set of Protein Structures
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussi...