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» Optimal detection of sequence similarity by local alignment
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IJFCS
2006
91views more  IJFCS 2006»
13 years 7 months ago
Bit-parallel Computation of Local Similarity Score Matrices with Unitary Weights
Abstract. Local similarity computation between two sequences permits detecting all the relevant alignments present between subsequences thereof. A well-known dynamic programming al...
Heikki Hyyrö, Gonzalo Navarro
BMCBI
2010
131views more  BMCBI 2010»
13 years 2 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
HICSS
1994
IEEE
157views Biometrics» more  HICSS 1994»
13 years 11 months ago
A Protein Family Classification Method for Analysis of Large DNA Sequences
A method is described for identification and classification of proteins encoded in large DNA sequences. Previously, an automated system was introduced for the general detection of...
Steven Henikoff, Jorja G. Henikoff
ACL
2009
13 years 5 months ago
Coordinate Structure Analysis with Global Structural Constraints and Alignment-Based Local Features
We propose a hybrid approach to coordinate structure analysis that combines a simple grammar to ensure consistent global structure of coordinations in a sentence, and features bas...
Kazuo Hara, Masashi Shimbo, Hideharu Okuma, Yuji M...